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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
15
total RNA-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
128
DNA binding
16
Transcription
10
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
92
transcription factor
23
RNA binding protein
18
control
16
histone
16
histone modification
16
recombinant protein
9
chromatin remodeller
8
broad histone mark
8
narrow histone mark
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
162
fastq
160
bam
141
bigWig
119
bed narrowPeak
103
bigBed narrowPeak
15
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
162
Homo sapiens
Biosample type
89
cell line
39
in vitro differentiated cells
33
tissue
1
primary cell
Organ
54
liver
42
blood
42
bodily fluid
16
spleen
13
embryo
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
162
AMP
Genome assembly (visualization)
140
GRCh38
132
hg19
Lab
162
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
7
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
162 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
FAIRE-seq
Hi-C
single cell RNA-seq
cell line
HepG2
45
1
1
GM12878
42
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
tissue
spleen
13
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
pancreatic cell
1
See all biosamples
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