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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
23
Transcription
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
3
control
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
23
tsv
16
bigWig
13
bam
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed narrowPeak
1
bigBed narrowPeak
Organism
30
Homo sapiens
Biosample type
23
tissue
7
primary cell
Organ
30
brain
28
heart
20
connective tissue
15
vasculature
14
adipose tissue
14
blood vessel
13
epithelium
12
musculature of body
11
kidney
11
liver
8
limb
7
pancreas
5
artery
2
eye
2
pericardium
1
nerve
1
spinal cord
Project
30
AMP
Genome assembly (visualization)
17
hg19
12
GRCh38
Lab
30
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
30 results
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total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
frontal cortex
2
1
1
cerebellum
2
cerebellum (Hemisphere)
1
1
diencephalon
1
1
temporal lobe
1
1
+ See 11 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
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