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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
total RNA-seq
196
ChIP-seq
187
DNase-seq
34
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
221
DNA accessibility
207
Transcription
196
DNA binding
1
DNA methylation
Target of assay
159
histone
159
histone modification
84
broad histone mark
75
narrow histone mark
20
transcription factor
17
control
9
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
513
bigWig
495
bam
343
bed narrowPeak
210
bigBed narrowPeak
198
tsv
189
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
90
tagAlign
Organism
642
Homo sapiens
Biosample type
261
primary cell
228
tissue
132
in vitro differentiated cells
21
cell line
Organ
81
kidney
66
pancreas
46
epithelium
45
musculature of body
42
brain
41
heart
35
limb
22
connective tissue
18
ureter
10
vasculature
8
blood vessel
8
eye
4
artery
3
adipose tissue
3
liver
2
embryo
1
bone element
1
bone marrow
1
nerve
1
spinal cord
1
thymus
Project
489
AMP
153
T1D
Genome assembly (visualization)
503
hg19
486
GRCh38
Lab
407
AMP-T2D consortium
235
Kyle Gaulton, UCSD
Audit category:
117
inconsistent ontology term
BIOSAMPLE
ASSAY
642 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
52
85
13
1
1
CD8-positive, alpha-beta T cell
2
33
1
cardiac fibroblast
5
3
skeletal muscle satellite cell
8
mesenchymal stem cell
7
+ See 33 more…
tissue
islet of Langerhans
36
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 52 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
cell line
EndoC_BH1
4
1
16
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