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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
40
total RNA-seq
32
pCHi-C
10
Hi-C
4
ATAC-seq
Assay category
123
DNA binding
40
Transcription
10
3D chromatin structure
4
DNA accessibility
Target of assay
95
histone
95
histone modification
58
broad histone mark
37
narrow histone mark
23
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
136
bam
117
bigWig
100
bed narrowPeak
97
bigBed narrowPeak
70
tsv
12
bedpe bed3+
10
hic
2
ibed
Organism
209
Homo sapiens
Biosample type
180
tissue
11
cell line
8
in vitro differentiated cells
6
primary cell
4
stem cell
Organ
57
blood vessel
57
vasculature
42
brain
31
heart
17
pancreas
14
musculature of body
11
epithelium
10
limb
7
artery
7
kidney
4
connective tissue
4
liver
3
adipose tissue
2
intestine
1
adrenal gland
1
esophagus
1
eye
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
202
AMP
7
T1D
Genome assembly (visualization)
129
hg19
112
GRCh38
Lab
209
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
BIOSAMPLE
ASSAY
209 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
Hi-C
ATAC-seq
tissue
ascending aorta
16
1
aorta
13
1
1
1
thoracic aorta
16
temporal lobe
15
angular gyrus
13
+ See 45 more…
cell line
EndoC_BH1
1
2
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
primary cell
kidney epithelial cell
5
endothelial cell of umbilical vein
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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