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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
total RNA-seq
12
ATAC-seq
11
ChIP-seq
1
Hi-C
Assay category
25
Transcription
12
DNA accessibility
11
DNA binding
1
3D chromatin structure
Target of assay
8
histone
8
histone modification
7
broad histone mark
3
control
1
narrow histone mark
Date released
715
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
25
tsv
14
fastq
13
bam
11
bigWig
10
tagAlign
9
bed narrowPeak
3
bed broadPeak
3
bigBed narrowPeak
1
bedpe
1
hic
Organism
49
Homo sapiens
Biosample type
49
tissue
Organ
24
brain
11
pancreas
3
adipose tissue
3
blood vessel
3
connective tissue
3
heart
3
limb
3
vasculature
2
artery
2
musculature of body
1
eye
1
liver
1
nerve
1
spinal cord
1
spleen
Project
49
AMP
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
43
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
49 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
tissue
brain
11
islet of Langerhans
5
1
body of pancreas
1
4
cerebellum (Hemisphere)
1
1
omental fat pad
1
1
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