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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
total RNA-seq
34
ATAC-seq
24
ChIP-seq
2
Hi-C
Assay category
45
Transcription
34
DNA accessibility
24
DNA binding
2
3D chromatin structure
Target of assay
18
histone
18
histone modification
13
broad histone mark
5
control
5
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
715
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
71
bam
46
bed narrowPeak
45
tsv
42
bigWig
13
fastq
10
tagAlign
3
bigBed narrowPeak
2
bed broadPeak
2
bedpe bed3+
2
hic
Organism
105
Homo sapiens
Biosample type
84
tissue
16
cell line
5
in vitro differentiated cells
Organ
61
pancreas
24
brain
16
epithelium
4
adipose tissue
4
connective tissue
3
blood vessel
3
heart
3
limb
3
vasculature
2
artery
2
musculature of body
1
eye
1
liver
1
nerve
1
spinal cord
1
spleen
Project
105
AMP
Genome assembly (visualization)
69
hg19
68
GRCh38
Lab
104
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
23
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
105 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
19
20
1
brain
11
body of pancreas
1
4
cerebellum (Hemisphere)
1
1
omental fat pad
1
1
+ See 24 more…
cell line
EndoC_BH1
1
1
13
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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