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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
41
total RNA-seq
40
single cell RNA-seq
3
ATAC-seq
1
Hi-C
Assay category
154
DNA binding
81
Transcription
3
DNA accessibility
1
3D chromatin structure
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
33
transcription factor
27
control
7
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
154
bam
130
bigWig
127
bed narrowPeak
127
bigBed narrowPeak
76
fastq
25
tsv
19
zippedFastqFolder
Organism
239
Homo sapiens
Biosample type
147
tissue
64
primary cell
28
cell line
Organ
53
blood vessel
53
vasculature
40
brain
27
blood
27
bodily fluid
24
epithelium
24
heart
22
pancreas
10
limb
9
musculature of body
7
artery
7
spleen
5
kidney
2
adipose tissue
2
connective tissue
2
liver
1
eye
1
nerve
1
spinal cord
Project
180
AMP
59
HPAP
Genome assembly (visualization)
129
GRCh38
127
hg19
Lab
180
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
239 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
Hi-C
tissue
ascending aorta
16
1
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 28 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
kidney epithelial cell
5
pancreatic beta cell
1
1
cell line
GM12878
27
HepG2
1
See all biosamples
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