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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ATAC-seq
84
RNA microarray
29
snATAC-seq
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
Transcription
154
DNA accessibility
DNA binding
6
DNA methylation
Date released
187
June, 2019
144
February, 2021
140
May, 2022
111
February, 2023
101
May, 2020
96
August, 2021
52
May, 2021
46
March, 2020
43
July, 2019
42
October, 2019
28
November, 2019
26
August, 2017
17
November, 2018
16
January, 2021
14
September, 2018
12
November, 2020
11
May, 2023
10
April, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
March, 2019
5
September, 2017
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
March, 2023
Available data
87
txt
83
bed narrowPeak
33
fastq
21
tsv
19
bam
12
bed bed3
7
bed bedgraph
6
bed bed3+
4
bigWig
Organism
254
Homo sapiens
Biosample type
176
tissue
47
primary cell
16
cell line
16
in vitro differentiated cells
Organ
96
bone element
43
artery
43
blood vessel
43
heart
43
vasculature
27
eye
20
pancreas
19
epithelium
16
connective tissue
12
skeleton
6
limb
3
kidney
2
liver
1
adipose tissue
1
brain
Project
204
AMP
33
HPAP
18
T1D
Genome assembly (visualization)
69
hg19
53
GRCh38
Lab
201
AMP-T2D consortium
33
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
93
inconsistent ontology term
27
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
Transcription
BIOSAMPLE
ASSAY
255 results
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Clear Filters
ATAC-seq
RNA microarray
snATAC-seq
WGBS
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
tissue
bone element
84
coronary artery
35
retina
15
islet of Langerhans
11
2
pigmented layer of retina
12
+ See 17 more…
primary cell
Langerhans cell
27
pancreatic alpha cell
6
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
3
2
1
HepG2
1
1
in vitro differentiated cells
adipocyte
5
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
+ See 2 more…
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