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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
84
RNA microarray
27
snATAC-seq
22
ATAC-seq
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
545
Transcription
49
DNA accessibility
DNA binding
6
DNA methylation
Date released
689
February, 2021
291
May, 2020
234
May, 2021
204
February, 2023
187
June, 2019
170
August, 2021
166
May, 2022
120
July, 2018
115
August, 2017
105
July, 2019
72
October, 2019
61
March, 2020
48
November, 2019
40
September, 2018
25
February, 2020
19
September, 2020
17
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
12
May, 2023
10
April, 2020
8
January, 2018
8
October, 2017
7
August, 2020
7
December, 2019
6
April, 2018
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
October, 2022
2
October, 2018
1
August, 2018
1
August, 2022
1
December, 2018
Available data
564
bam
554
tsv
546
bigWig
84
txt
33
fastq
18
bed narrowPeak
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
689
Homo sapiens
Biosample type
539
tissue
88
cell line
36
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
60
artery
60
blood vessel
60
heart
60
vasculature
32
epithelium
32
pancreas
8
skeleton
6
limb
3
kidney
2
liver
Project
656
AMP
33
HPAP
Genome assembly (visualization)
569
hg19
563
GRCh38
Lab
656
AMP-T2D consortium
33
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
27
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
689 results
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total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
1
primary cell
Langerhans cell
27
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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