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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
565
total RNA-seq
84
RNA microarray
48
ATAC-seq
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
Hi-C
2
pCHi-C
Assay category
583
Transcription
75
DNA accessibility
DNA binding
6
DNA methylation
2
3D chromatin structure
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
610
bam
579
tsv
566
bigWig
89
txt
45
fastq
44
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
bedpe bed3+
2
hic
Organism
755
Homo sapiens
Biosample type
585
tissue
91
cell line
48
primary cell
31
in vitro differentiated cells
Organ
456
connective tissue
387
adipose tissue
150
bone element
74
pancreas
60
artery
60
blood vessel
60
heart
60
vasculature
35
epithelium
8
kidney
8
skeleton
6
limb
3
liver
Project
710
AMP
45
HPAP
Genome assembly (visualization)
617
hg19
609
GRCh38
Lab
710
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
137
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
month_released!
May, 2023
BIOSAMPLE
ASSAY
755 results
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total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
Hi-C
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
19
19
1
kidney
5
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cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
27
1
1
HepG2
1
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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