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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
561
total RNA-seq
84
RNA microarray
58
single cell RNA-seq
27
snATAC-seq
25
ATAC-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
619
Transcription
52
DNA accessibility
DNA binding
6
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
564
bam
559
tsv
549
bigWig
89
txt
86
fastq
19
zippedFastqFolder
18
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
766
Homo sapiens
Biosample type
545
tissue
107
primary cell
88
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
60
artery
60
blood vessel
60
heart
60
vasculature
51
epithelium
51
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
662
AMP
104
HPAP
Genome assembly (visualization)
569
hg19
566
GRCh38
Lab
662
AMP-T2D consortium
104
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
766 results
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Clear Filters
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
primary cell
Langerhans cell
52
27
pancreatic alpha cell
15
2
6
osteoblast
1
1
1
pancreatic beta cell
1
1
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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