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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
571
total RNA-seq
84
RNA microarray
36
ATAC-seq
27
snATAC-seq
14
single cell RNA-seq
6
WGBS
2
pCHi-C
Assay category
585
Transcription
63
DNA accessibility
DNA binding
6
DNA methylation
Date released
699
February, 2021
291
May, 2020
234
May, 2021
205
February, 2023
200
May, 2022
168
July, 2018
146
August, 2021
115
August, 2017
109
June, 2019
97
July, 2019
63
October, 2019
59
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
8
January, 2018
8
October, 2017
7
August, 2020
7
December, 2019
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
1
May, 2023
Available data
604
bam
586
bigWig
577
tsv
86
fastq
84
txt
32
bed narrowPeak
14
bigBed narrowPeak
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
csv
Organism
740
Homo sapiens
Biosample type
537
tissue
89
primary cell
88
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
72
epithelium
72
pancreas
60
artery
60
blood vessel
60
heart
60
vasculature
kidney
8
skeleton
6
limb
3
liver
Project
695
AMP
45
HPAP
Genome assembly (visualization)
609
hg19
603
GRCh38
Lab
695
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
27
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
organ_slims!
kidney
BIOSAMPLE
ASSAY
740 results
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total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
single cell RNA-seq
WGBS
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 9 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
10
3
6
pancreatic beta cell
10
4
pancreatic ductal cell
4
4
pancreatic acinar cell
2
3
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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