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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
7
ATAC-seq
6
WGBS
3
snDrop-seq
1
pCHi-C
Assay category
485
Transcription
34
DNA accessibility
6
DNA methylation
Date released
613
February, 2021
290
May, 2020
250
August, 2021
214
May, 2021
200
May, 2022
199
February, 2023
168
July, 2018
155
June, 2019
115
August, 2017
103
July, 2019
59
September, 2020
55
October, 2019
51
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
41
September, 2018
22
February, 2020
19
April, 2020
17
November, 2018
16
January, 2021
15
February, 2018
15
May, 2023
10
December, 2019
10
November, 2020
8
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
September, 2017
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
2
October, 2018
1
August, 2022
Available data
481
tsv
471
bam
468
bigWig
89
txt
45
fastq
6
csv
4
bed bedgraph
3
bed narrowPeak
1
bed bed3
1
bed bed3+
Organism
613
Homo sapiens
Biosample type
539
tissue
cell line
48
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
8
kidney
8
skeleton
6
epithelium
limb
6
pancreas
1
liver
Project
568
AMP
45
HPAP
Genome assembly (visualization)
475
hg19
470
GRCh38
Lab
568
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
32
audit script error
assay_slims!
DNA binding
organ_slims!
limb
biosample_type!
cell line
BIOSAMPLE
ASSAY
613 results
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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 7 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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