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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
27
snATAC-seq
14
ATAC-seq
12
single cell RNA-seq
6
WGBS
2
pCHi-C
Assay category
113
Transcription
41
DNA accessibility
DNA binding
6
DNA methylation
Date released
194
May, 2021
162
February, 2021
148
May, 2020
134
May, 2022
109
February, 2023
59
September, 2020
48
July, 2018
47
August, 2021
43
April, 2018
41
September, 2018
31
July, 2019
25
October, 2019
24
June, 2019
23
March, 2020
15
February, 2018
12
November, 2020
8
January, 2021
8
November, 2019
7
August, 2017
7
August, 2020
7
December, 2019
6
January, 2018
5
January, 2019
5
September, 2017
4
August, 2018
3
June, 2018
3
October, 2022
2
November, 2018
2
October, 2018
1
December, 2018
1
March, 2023
Available data
112
bam
107
tsv
102
bigWig
45
fastq
10
bed narrowPeak
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
162
Homo sapiens
Biosample type
tissue
88
cell line
48
primary cell
26
in vitro differentiated cells
Organ
60
artery
60
blood vessel
60
heart
60
vasculature
32
epithelium
32
pancreas
11
connective tissue
2
liver
Project
117
AMP
45
HPAP
Genome assembly (visualization)
117
hg19
111
GRCh38
Lab
117
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
27
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
biosample_type!
tissue
BIOSAMPLE
ASSAY
162 results
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Clear Filters
total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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