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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
589
total RNA-seq
84
RNA microarray
28
ATAC-seq
27
snATAC-seq
21
single cell RNA-seq
18
small RNA-seq
8
ChIP-seq
8
Hi-C
3
snDrop-seq
2
FAIRE-seq
2
pCHi-C
Assay category
628
Transcription
57
DNA accessibility
DNA methylation
8
3D chromatin structure
8
DNA binding
Target of assay
6
control
5
transcription factor
Date released
709
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
94
December, 2017
81
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
645
bam
628
bigWig
618
tsv
89
txt
39
fastq
30
bed narrowPeak
8
tagAlign
6
bed bed3+
6
csv
4
bed bedgraph
4
hdf5
2
bed bed3
2
bigBed narrowPeak
Organism
790
Homo sapiens
Biosample type
604
tissue
96
cell line
64
primary cell
26
in vitro differentiated cells
Organ
472
connective tissue
398
adipose tissue
150
bone element
81
heart
75
blood vessel
75
vasculature
69
artery
33
epithelium
30
pancreas
16
brain
15
kidney
11
liver
10
limb
8
musculature of body
8
skeleton
1
pericardium
Project
751
AMP
39
HPAP
Genome assembly (visualization)
650
hg19
639
GRCh38
Lab
751
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
790 results
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total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
single cell RNA-seq
small RNA-seq
ChIP-seq
Hi-C
snDrop-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
subcutaneous adipose tissue
6
1
kidney
5
1
+ See 33 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
+ See 16 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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