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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
561
total RNA-seq
84
RNA microarray
58
single cell RNA-seq
27
snATAC-seq
25
ATAC-seq
8
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
619
Transcription
52
DNA accessibility
8
DNA binding
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
709
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
94
December, 2017
81
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
572
bam
554
bigWig
553
tsv
89
txt
80
fastq
23
bed narrowPeak
19
zippedFastqFolder
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
768
Homo sapiens
Biosample type
545
tissue
101
primary cell
96
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
45
epithelium
45
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
670
AMP
98
HPAP
Genome assembly (visualization)
574
hg19
571
GRCh38
Lab
670
AMP-T2D consortium
98
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
768 results
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Clear Filters
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
ATAC-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
primary cell
Langerhans cell
52
27
pancreatic alpha cell
15
2
osteoblast
1
1
1
pancreatic beta cell
1
1
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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