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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
27
snATAC-seq
2
FAIRE-seq
Assay category
628
Transcription
57
DNA accessibility
33
DNA methylation
8
3D chromatin structure
8
DNA binding
Date released
187
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
33
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
27
fastq
26
bam
25
bed narrowPeak
9
bigWig
4
bed bedgraph
2
bed bed3
2
bigBed narrowPeak
Organism
57
Homo sapiens
Biosample type
28
primary cell
16
tissue
9
cell line
4
in vitro differentiated cells
Organ
12
heart
10
blood vessel
10
vasculature
9
artery
8
bone element
8
skeleton
6
limb
5
connective tissue
2
brain
1
kidney
1
liver
Project
30
AMP
27
HPAP
Genome assembly (visualization)
29
hg19
24
GRCh38
Lab
30
AMP-T2D consortium
27
Klaus Kaestner, Upenn
Audit category:
27
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
57 results
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ATAC-seq
snATAC-seq
FAIRE-seq
primary cell
Langerhans cell
27
osteoblast
1
tissue
heart left ventricle
2
coronary artery
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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cell line
smooth muscle cell of the coronary artery
8
HepG2
1
in vitro differentiated cells
adipocyte
4
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