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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ATAC-seq
27
snATAC-seq
Assay category
583
Transcription
75
DNA accessibility
21
DNA binding
6
DNA methylation
2
3D chromatin structure
Date released
187
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
33
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
44
bam
44
bed narrowPeak
27
fastq
4
bed bedgraph
2
bed bed3
1
bigWig
Organism
75
Homo sapiens
Biosample type
28
primary cell
28
tissue
10
cell line
9
in vitro differentiated cells
Organ
20
pancreas
8
artery
8
blood vessel
8
bone element
8
heart
8
skeleton
8
vasculature
6
connective tissue
6
limb
1
adipose tissue
1
epithelium
1
liver
Project
48
AMP
27
HPAP
Genome assembly (visualization)
48
hg19
44
GRCh38
Lab
48
AMP-T2D consortium
27
Klaus Kaestner, Upenn
Audit category:
27
audit script error
7
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
75 results
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ATAC-seq
snATAC-seq
primary cell
Langerhans cell
27
osteoblast
1
tissue
islet of Langerhans
19
adipose tissue(adipose white tissue)
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 5 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
4
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