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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
27
snATAC-seq
ATAC-seq
12
single cell RNA-seq
8
ChIP-seq
6
WGBS
2
pCHi-C
Assay category
27
DNA accessibility
12
Transcription
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
324
November, 2017
182
May, 2021
124
August, 2017
95
May, 2022
62
November, 2018
58
October, 2019
55
February, 2021
55
June, 2019
54
August, 2021
48
July, 2018
46
December, 2017
43
April, 2018
40
September, 2020
33
September, 2018
28
December, 2018
24
February, 2018
18
January, 2019
18
July, 2019
16
March, 2020
14
November, 2019
8
January, 2021
7
November, 2020
6
February, 2023
5
January, 2018
5
March, 2023
5
May, 2019
4
August, 2018
4
October, 2022
3
June, 2018
2
December, 2019
1
May, 2020
Available data
45
fastq
9
bam
8
tagAlign
6
tsv
5
bed narrowPeak
5
bigWig
2
bed bed3+
Organism
55
Homo sapiens
Biosample type
tissue
46
primary cell
9
cell line
Organ
6
artery
6
blood vessel
6
epithelium
6
heart
6
pancreas
6
vasculature
1
connective tissue
1
liver
Project
45
HPAP
10
AMP
Genome assembly (visualization)
7
hg19
5
GRCh38
Lab
45
Klaus Kaestner, Upenn
10
AMP-T2D consortium
Audit category:
27
audit script error
assay_title!
ATAC-seq
total RNA-seq
biosample_type!
tissue
BIOSAMPLE
ASSAY
55 results
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Clear Filters
snATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
cell line
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
HepG2
1
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