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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
549
total RNA-seq
84
RNA microarray
27
snATAC-seq
23
ATAC-seq
single cell RNA-seq
10
MeRIP-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
1
DNase-seq
Assay category
549
Transcription
51
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
8
control
5
nucleotide modification
5
transcription factor
Date released
697
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
218
June, 2019
213
August, 2021
204
February, 2023
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
6
April, 2018
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
578
bam
558
tsv
556
bigWig
84
txt
33
fastq
25
bed narrowPeak
8
tagAlign
4
bed bedgraph
3
bed bed3+
2
bed bed3
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
713
Homo sapiens
Biosample type
543
tissue
102
cell line
42
primary cell
26
in vitro differentiated cells
Organ
461
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
42
pancreas
38
epithelium
8
skeleton
6
limb
3
kidney
2
liver
Project
680
AMP
33
HPAP
Genome assembly (visualization)
580
hg19
574
GRCh38
Lab
670
AMP-T2D consortium
33
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
134
inconsistent ontology term
27
audit script error
1
inconsistent replicate
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
713 results
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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
MeRIP-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
DNase-seq
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
4
visceral abdominal adipose tissue
3
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cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
6
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
osteoblast
5
2
1
1
pancreatic alpha cell
6
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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