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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
84
RNA microarray
27
snATAC-seq
ATAC-seq
18
single cell RNA-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
27
DNA accessibility
18
Transcription
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
317
August, 2017
262
October, 2019
218
June, 2019
183
May, 2021
169
August, 2021
148
February, 2021
120
May, 2019
97
May, 2022
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
58
July, 2019
51
May, 2020
48
July, 2018
47
September, 2023
45
March, 2020
43
April, 2018
40
September, 2020
35
December, 2018
33
September, 2018
25
January, 2019
24
February, 2018
19
April, 2020
16
January, 2021
15
November, 2019
15
October, 2017
11
November, 2020
9
February, 2023
6
September, 2017
5
December, 2019
5
January, 2018
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
3
May, 2023
1
August, 2022
1
March, 2019
Available data
89
txt
45
fastq
14
tsv
9
bam
8
tagAlign
6
csv
5
bed narrowPeak
5
bigWig
2
bed bed3+
Organism
148
Homo sapiens
Biosample type
93
tissue
46
primary cell
9
cell line
Organ
84
bone element
8
kidney
6
artery
6
blood vessel
6
epithelium
6
heart
6
pancreas
6
vasculature
2
liver
1
connective tissue
Project
103
AMP
45
HPAP
Genome assembly (visualization)
7
hg19
5
GRCh38
Lab
103
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
assay_title!
total RNA-seq
ATAC-seq
BIOSAMPLE
ASSAY
148 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
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primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
cell line
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
HepG2
1
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