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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
ATAC-seq
18
single cell RNA-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
45
DNA accessibility
18
Transcription
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
278
October, 2019
254
August, 2017
218
June, 2019
210
August, 2021
174
May, 2022
169
May, 2021
166
February, 2021
151
May, 2020
120
May, 2019
100
February, 2023
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
51
December, 2017
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
March, 2020
43
September, 2020
36
November, 2019
35
December, 2018
25
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
December, 2019
3
June, 2018
1
August, 2022
Available data
89
txt
45
fastq
27
bam
23
bed narrowPeak
14
tsv
8
tagAlign
6
bigWig
6
csv
2
bed bed3
2
bed bed3+
Organism
166
Homo sapiens
Biosample type
101
tissue
47
primary cell
18
cell line
in vitro differentiated cells
Organ
92
bone element
14
artery
14
blood vessel
14
heart
14
vasculature
8
kidney
8
skeleton
6
epithelium
6
limb
6
pancreas
3
liver
2
connective tissue
Project
121
AMP
45
HPAP
Genome assembly (visualization)
25
hg19
23
GRCh38
Lab
121
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
total RNA-seq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
166 results
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Clear Filters
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 9 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
1
iPSC derived cell line
2
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