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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
125
ATAC-seq
84
RNA microarray
29
snATAC-seq
19
single cell RNA-seq
8
ChIP-seq
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
154
DNA accessibility
19
Transcription
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
92
txt
88
bed narrowPeak
45
fastq
27
bam
26
tsv
12
bed bed3
9
bigWig
8
tagAlign
7
bed bedgraph
6
bed bed3+
6
csv
Organism
281
Homo sapiens
Biosample type
183
tissue
59
primary cell
24
cell line
16
in vitro differentiated cells
Organ
96
bone element
50
heart
49
artery
49
blood vessel
49
vasculature
27
eye
20
pancreas
19
epithelium
16
connective tissue
12
skeleton
8
kidney
6
limb
3
liver
1
adipose tissue
1
brain
Project
219
AMP
45
HPAP
18
T1D
Genome assembly (visualization)
74
hg19
58
GRCh38
Lab
216
AMP-T2D consortium
45
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
93
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
282 results
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Clear Filters
ATAC-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
tissue
bone element
84
coronary artery
35
retina
15
islet of Langerhans
11
2
pigmented layer of retina
12
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primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
8
6
EndoC_BH1
3
2
1
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
5
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
+ See 2 more…
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