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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
84
RNA microarray
34
pCHi-C
27
snATAC-seq
26
ATAC-seq
18
single cell RNA-seq
11
ChIP-seq
10
Hi-C
6
WGBS
3
snDrop-seq
Assay category
53
DNA accessibility
18
Transcription
11
DNA binding
10
3D chromatin structure
6
DNA methylation
Target of assay
5
transcription factor
3
control
3
histone
3
histone modification
3
narrow histone mark
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
89
txt
46
tsv
45
fastq
30
bam
26
bed narrowPeak
13
bigWig
12
bedpe bed3+
10
hic
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
ibed
Organism
219
Homo sapiens
Biosample type
132
tissue
48
primary cell
25
cell line
10
in vitro differentiated cells
4
stem cell
Organ
92
bone element
19
heart
17
blood vessel
17
vasculature
15
pancreas
14
artery
10
epithelium
10
kidney
8
connective tissue
8
skeleton
6
limb
5
liver
3
musculature of body
2
brain
2
intestine
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
171
AMP
45
HPAP
3
T1D
Genome assembly (visualization)
48
hg19
26
GRCh38
Lab
174
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
97
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
219 results
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Clear Filters
RNA microarray
pCHi-C
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
Hi-C
WGBS
snDrop-seq
tissue
bone element
84
kidney
5
islet of Langerhans
2
2
liver
1
1
1
psoas muscle
1
2
+ See 29 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
endothelial cell of umbilical vein
1
cell line
smooth muscle cell of the coronary artery
8
6
EndoC_BH1
2
1
HepG2
1
1
iPSC derived cell line
2
MCF-7
1
+ See 3 more…
in vitro differentiated cells
adipocyte
4
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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