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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
122
ATAC-seq
84
RNA microarray
58
ChIP-seq
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
3
pCHi-C
3
snDrop-seq
Assay category
149
DNA accessibility
58
DNA binding
18
Transcription
6
DNA methylation
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
5
transcription factor
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
122
bam
89
txt
78
bigWig
58
tagAlign
50
bed narrowPeak
45
fastq
15
tsv
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
321
Homo sapiens
Biosample type
151
tissue
147
primary cell
19
cell line
4
in vitro differentiated cells
Organ
92
bone element
54
liver
14
artery
14
blood vessel
14
heart
14
vasculature
8
kidney
8
skeleton
6
connective tissue
6
epithelium
6
limb
6
pancreas
Project
276
AMP
45
HPAP
Genome assembly (visualization)
101
hg19
42
GRCh38
Lab
276
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
88
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
321 results
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Clear Filters
ATAC-seq
RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
WGBS
pCHi-C
snDrop-seq
tissue
bone element
84
liver
50
1
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
+ See 9 more…
primary cell
Langerhans cell
27
12
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
pancreatic alpha cell
6
+ See 26 more…
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
2
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
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