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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
493
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
ChIP-seq
2
pCHi-C
Assay category
511
Transcription
Date released
511
February, 2021
190
May, 2020
182
May, 2021
174
August, 2021
168
July, 2018
94
February, 2023
89
August, 2017
60
May, 2022
56
September, 2020
49
April, 2018
47
September, 2023
42
July, 2019
30
October, 2019
27
September, 2018
22
February, 2020
20
November, 2019
15
February, 2018
14
March, 2020
9
April, 2020
8
December, 2019
5
January, 2019
4
May, 2023
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
498
tsv
493
bam
493
bigWig
12
fastq
6
csv
5
txt
Organism
511
Homo sapiens
Biosample type
450
tissue
26
cell line
22
in vitro differentiated cells
13
primary cell
Organ
449
connective tissue
386
adipose tissue
58
bone element
52
artery
52
blood vessel
52
heart
vasculature
26
epithelium
26
pancreas
5
kidney
1
liver
Project
499
AMP
12
HPAP
Genome assembly (visualization)
493
GRCh38
493
hg19
Lab
499
AMP-T2D consortium
12
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
5
audit script error
organ_slims!
vasculature
BIOSAMPLE
ASSAY
511 results
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total RNA-seq
single cell RNA-seq
tissue
adipose tissue
381
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 1 more…
cell line
EndoC_BH1
26
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
primary cell
Langerhans cell
12
osteoblast
1
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