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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
6
WGBS
4
ATAC-seq
3
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
31
DNA accessibility
Transcription
6
DNA methylation
3
DNA binding
Target of assay
3
control
Date released
162
August, 2017
140
May, 2022
132
May, 2020
129
February, 2021
126
November, 2017
114
May, 2021
93
October, 2019
76
February, 2023
49
August, 2021
46
March, 2020
29
July, 2019
29
October, 2018
24
May, 2019
17
December, 2017
16
April, 2019
16
January, 2021
10
April, 2020
10
November, 2020
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
8
November, 2018
5
December, 2018
4
January, 2019
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
2
December, 2019
1
August, 2018
1
August, 2022
Available data
84
txt
33
fastq
9
tsv
4
bam
4
bed bedgraph
3
tagAlign
2
bed bed3+
Organism
129
Homo sapiens
Biosample type
87
tissue
34
primary cell
4
cell line
4
in vitro differentiated cells
Organ
84
bone element
6
epithelium
6
pancreas
5
connective tissue
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
1
liver
Project
96
AMP
33
HPAP
Genome assembly (visualization)
29
hg19
GRCh38
Lab
96
AMP-T2D consortium
33
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
assembly!
GRCh38
assay_slims!
Transcription
BIOSAMPLE
ASSAY
129 results
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Clear Filters
RNA microarray
snATAC-seq
WGBS
ATAC-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
primary cell
Langerhans cell
27
pancreatic alpha cell
6
osteoblast
1
cell line
smooth muscle cell of the coronary artery
2
HepG2
1
iPSC derived cell line
1
in vitro differentiated cells
adipocyte
4
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