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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
6
ATAC-seq
6
WGBS
ChIP-seq
3
snDrop-seq
2
pCHi-C
1
Hi-C
Assay category
33
DNA accessibility
18
Transcription
6
DNA methylation
1
3D chromatin structure
Date released
200
May, 2022
187
August, 2021
170
February, 2023
144
February, 2021
103
May, 2020
56
September, 2020
48
March, 2020
48
May, 2021
47
September, 2023
41
October, 2019
29
July, 2019
25
February, 2020
19
April, 2020
17
August, 2017
16
January, 2021
10
November, 2020
8
January, 2018
5
December, 2019
4
July, 2018
4
March, 2023
4
October, 2022
3
March, 2019
3
May, 2023
2
November, 2018
2
November, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
September, 2018
Available data
89
txt
46
fastq
14
tsv
6
csv
4
bed bedgraph
2
bam
2
bed bed3+
1
bed broadPeak
1
bedpe
1
hic
Organism
147
Homo sapiens
Biosample type
96
tissue
46
primary cell
4
in vitro differentiated cells
1
cell line
Organ
84
bone element
9
pancreas
8
kidney
6
epithelium
5
connective tissue
2
liver
Project
102
AMP
45
HPAP
Genome assembly (visualization)
572
hg19
GRCh38
Lab
99
AMP-T2D consortium
45
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
84
inconsistent ontology term
32
audit script error
assembly!
GRCh38
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
147 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
Hi-C
tissue
bone element
84
kidney
5
islet of Langerhans
2
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
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primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
in vitro differentiated cells
adipocyte
4
cell line
HepG2
1
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