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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
9
total RNA-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
whole genome sequencing assay
Assay category
21
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
7
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
98
November, 2017
36
August, 2021
16
May, 2021
10
October, 2019
6
February, 2023
6
March, 2020
6
November, 2020
4
February, 2021
4
November, 2018
3
January, 2019
3
November, 2019
2
March, 2023
1
December, 2018
1
January, 2018
1
May, 2020
1
October, 2022
Available data
14
bed narrowPeak
14
bigWig
9
tsv
3
bam
3
tagAlign
1
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
40
Homo sapiens
Biosample type
258
tissue
47
primary cell
40
cell line
16
in vitro differentiated cells
Organ
32
liver
2
artery
2
blood vessel
2
epithelium
2
heart
2
kidney
2
pancreas
2
vasculature
Project
40
AMP
Genome assembly (visualization)
116
hg19
GRCh38
Lab
34
Bing Ren, UCSD
6
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
pCHi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
1
EndoC_BH1
2
HEK293T
2
smooth muscle cell of the coronary artery
2
Synthesized DNA
1
iPSC derived cell line
1
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