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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
13
single cell RNA-seq
6
WGBS
5
ChIP-seq
4
ATAC-seq
2
Hi-C
2
pCHi-C
Assay category
31
DNA accessibility
13
Transcription
6
DNA methylation
5
DNA binding
2
3D chromatin structure
Target of assay
5
control
Date released
200
May, 2022
170
February, 2023
162
August, 2017
148
August, 2021
139
February, 2021
134
May, 2020
126
November, 2017
123
May, 2021
99
October, 2019
56
September, 2020
46
March, 2020
29
October, 2018
25
February, 2020
24
July, 2019
23
May, 2019
19
April, 2020
17
December, 2017
16
January, 2021
11
April, 2019
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
7
June, 2019
5
December, 2018
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
2
December, 2019
1
August, 2018
1
August, 2022
1
September, 2018
Available data
84
txt
45
fastq
6
bam
6
tsv
4
bed bedgraph
3
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
csv
Organism
143
Homo sapiens
Biosample type
86
tissue
46
primary cell
7
cell line
4
in vitro differentiated cells
Organ
84
bone element
10
pancreas
9
epithelium
kidney
5
connective tissue
2
artery
2
blood vessel
2
heart
2
liver
2
vasculature
Project
98
AMP
45
HPAP
Genome assembly (visualization)
633
hg19
GRCh38
Lab
98
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
87
inconsistent ontology term
27
audit script error
assembly!
GRCh38
organ_slims!
kidney
BIOSAMPLE
ASSAY
143 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
tissue
bone element
84
islet of Langerhans
1
liver
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
cell line
EndoC_BH1
2
1
smooth muscle cell of the coronary artery
2
HepG2
1
iPSC derived cell line
1
in vitro differentiated cells
adipocyte
4
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