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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
4
ATAC-seq
3
ChIP-seq
3
snDrop-seq
2
Hi-C
2
pCHi-C
Assay category
31
DNA accessibility
18
Transcription
6
DNA methylation
3
DNA binding
2
3D chromatin structure
Target of assay
3
control
Date released
208
August, 2021
200
May, 2022
170
February, 2023
162
August, 2017
145
February, 2021
134
May, 2020
124
November, 2017
123
May, 2021
93
October, 2019
56
September, 2020
47
September, 2023
45
March, 2020
29
October, 2018
25
July, 2019
22
February, 2020
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
13
May, 2019
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
89
txt
45
fastq
14
tsv
6
csv
4
bam
4
bed bedgraph
2
bed bed3+
2
bedpe bed3+
2
hic
1
tagAlign
Organism
149
Homo sapiens
Biosample type
94
tissue
46
primary cell
5
cell line
4
in vitro differentiated cells
Organ
84
bone element
10
pancreas
9
epithelium
8
kidney
5
connective tissue
2
artery
2
blood vessel
2
heart
2
liver
vasculature
Project
104
AMP
45
HPAP
Genome assembly (visualization)
569
hg19
GRCh38
Lab
104
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
87
inconsistent ontology term
32
audit script error
assembly!
GRCh38
organ_slims!
vasculature
BIOSAMPLE
ASSAY
149 results
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RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
ATAC-seq
ChIP-seq
snDrop-seq
Hi-C
pCHi-C
tissue
bone element
84
kidney
5
islet of Langerhans
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
+ See 2 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
cell line
EndoC_BH1
2
1
HepG2
1
iPSC derived cell line
1
in vitro differentiated cells
adipocyte
4
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