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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
32
ChIP-seq
27
snATAC-seq
18
single cell RNA-seq
4
ATAC-seq
3
snDrop-seq
2
pCHi-C
Assay category
32
DNA binding
31
DNA accessibility
18
Transcription
Target of assay
32
control
Date released
211
August, 2021
150
August, 2017
141
February, 2021
134
May, 2020
124
November, 2017
120
May, 2022
118
February, 2023
106
May, 2021
95
October, 2019
47
September, 2023
45
March, 2020
40
September, 2020
29
October, 2018
25
February, 2020
23
May, 2019
21
July, 2019
19
April, 2020
16
April, 2019
16
January, 2021
14
December, 2017
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
6
June, 2019
5
December, 2018
4
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2020
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
November, 2019
1
October, 2022
1
September, 2018
Available data
89
txt
66
fastq
33
bam
8
tsv
6
csv
4
bed bedgraph
3
tagAlign
2
bed bed3+
Organism
170
Homo sapiens
Biosample type
122
tissue
40
primary cell
4
cell line
4
in vitro differentiated cells
Organ
84
bone element
23
connective tissue
18
adipose tissue
17
pancreas
8
kidney
epithelium
2
artery
2
blood vessel
2
heart
2
liver
2
vasculature
Project
131
AMP
39
HPAP
Genome assembly (visualization)
593
hg19
GRCh38
Lab
131
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
assembly!
GRCh38
organ_slims!
epithelium
BIOSAMPLE
ASSAY
170 results
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RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
snDrop-seq
pCHi-C
tissue
bone element
84
subcutaneous adipose tissue
10
body of pancreas
8
omental fat pad
8
kidney
5
+ See 6 more…
primary cell
Langerhans cell
27
12
osteoblast
1
cell line
smooth muscle cell of the coronary artery
2
HepG2
1
iPSC derived cell line
1
in vitro differentiated cells
adipocyte
4
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