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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
3
ChIP-seq
3
snDrop-seq
1
pCHi-C
Assay category
27
DNA accessibility
18
Transcription
6
DNA methylation
3
DNA binding
Target of assay
3
control
Date released
209
August, 2021
200
May, 2022
156
February, 2023
142
February, 2021
134
May, 2020
126
November, 2017
122
May, 2021
103
October, 2019
102
August, 2017
56
September, 2020
47
September, 2023
46
March, 2020
27
July, 2019
24
May, 2019
23
February, 2020
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
11
October, 2018
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
7
January, 2018
5
December, 2018
5
December, 2019
5
June, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2022
1
September, 2018
Available data
89
txt
45
fastq
14
tsv
6
csv
3
bam
3
tagAlign
1
bed bed3+
Organism
142
Homo sapiens
Biosample type
93
tissue
45
primary cell
4
cell line
Organ
84
bone element
8
kidney
6
epithelium
6
pancreas
connective tissue
2
artery
2
blood vessel
2
heart
2
liver
2
vasculature
Project
97
AMP
45
HPAP
Genome assembly (visualization)
119
hg19
GRCh38
Lab
97
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
assembly!
GRCh38
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
142 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
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primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
cell line
smooth muscle cell of the coronary artery
2
HepG2
1
iPSC derived cell line
1
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