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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
12
ChIP-seq
6
WGBS
3
snDrop-seq
1
ATAC-seq
Assay category
28
DNA accessibility
18
Transcription
12
DNA binding
6
DNA methylation
Target of assay
6
control
6
histone
6
histone modification
5
broad histone mark
1
narrow histone mark
Date released
259
August, 2021
161
May, 2022
160
February, 2023
141
February, 2021
135
August, 2017
125
November, 2017
97
October, 2019
83
May, 2021
81
May, 2020
59
September, 2020
47
September, 2023
32
March, 2020
31
June, 2019
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
17
July, 2019
17
November, 2018
16
January, 2021
15
April, 2019
14
May, 2023
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
89
txt
49
fastq
14
tsv
11
tagAlign
6
bam
6
csv
1
bigWig
Organism
151
Homo sapiens
Biosample type
103
tissue
45
primary cell
3
cell line
Organ
84
bone element
10
brain
8
kidney
6
epithelium
6
pancreas
2
artery
2
blood vessel
2
heart
2
vasculature
1
liver
Project
106
AMP
45
HPAP
Genome assembly (visualization)
hg19
582
GRCh38
Lab
106
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
151 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
ATAC-seq
tissue
bone element
84
brain
9
kidney
5
cerebellum (Hemisphere)
1
kidney (Cortex-Medulla)
1
+ See 3 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
cell line
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
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