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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
500
total RNA-seq
21
ATAC-seq
8
ChIP-seq
6
single cell RNA-seq
3
snDrop-seq
1
pCHi-C
Assay category
506
Transcription
21
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
539
February, 2021
397
November, 2017
352
August, 2017
312
August, 2021
259
October, 2019
194
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
112
February, 2023
104
May, 2021
90
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
47
September, 2023
46
March, 2020
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
March, 2023
4
November, 2020
3
December, 2019
1
August, 2018
1
August, 2022
1
October, 2022
Available data
525
bam
508
tsv
505
bigWig
22
bed narrowPeak
8
tagAlign
6
csv
5
txt
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
539
Homo sapiens
Biosample type
461
tissue
70
cell line
primary cell
8
in vitro differentiated cells
Organ
452
connective tissue
386
adipose tissue
66
artery
66
blood vessel
66
bone element
66
heart
66
vasculature
8
kidney
8
skeleton
6
limb
3
liver
Project
539
AMP
Genome assembly (visualization)
527
hg19
522
GRCh38
Lab
539
AMP-T2D consortium
Audit category:
inconsistent ontology term
5
audit script error
1
inconsistent replicate
audit.ERROR.category!
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
539 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
4
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