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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
187
DNase-seq
84
RNA microarray
39
ChIP-seq
22
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
551
Transcription
209
DNA accessibility
39
DNA binding
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
9
transcription factor
8
broad histone mark
4
RNA binding protein
Date released
670
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
790
bam
761
bigWig
553
tsv
233
bed narrowPeak
210
bigBed narrowPeak
189
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
89
txt
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
Organism
888
Homo sapiens
Biosample type
708
tissue
96
cell line
58
primary cell
26
in vitro differentiated cells
Organ
473
connective tissue
387
adipose tissue
150
bone element
101
heart
89
kidney
73
vasculature
71
blood vessel
68
artery
46
epithelium
43
musculature of body
38
limb
30
brain
30
pancreas
18
ureter
8
skeleton
7
eye
5
liver
Project
888
AMP
45
HPAP
Genome assembly (visualization)
778
GRCh38
761
hg19
Lab
888
AMP-T2D consortium
Audit category:
154
inconsistent ontology term
5
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
888 results
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total RNA-seq
DNase-seq
RNA microarray
ChIP-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
heart
18
kidney
13
5
+ See 51 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 18 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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