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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
13
ATAC-seq
3
snDrop-seq
1
pCHi-C
Assay category
485
Transcription
40
DNA accessibility
Date released
613
February, 2021
382
August, 2017
373
May, 2021
340
May, 2020
271
August, 2021
251
October, 2019
198
June, 2019
148
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
85
November, 2017
80
April, 2019
75
December, 2017
74
October, 2018
52
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
7
December, 2018
7
January, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
December, 2019
3
March, 2023
2
June, 2018
1
August, 2018
1
August, 2022
Available data
477
bam
475
tsv
468
bigWig
89
txt
39
fastq
9
bed narrowPeak
6
csv
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
613
Homo sapiens
Biosample type
545
tissue
cell line
42
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
8
kidney
8
skeleton
epithelium
6
limb
6
pancreas
1
liver
Project
574
AMP
39
HPAP
Genome assembly (visualization)
481
hg19
476
GRCh38
Lab
574
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
32
audit script error
biosample_type!
cell line
organ_slims!
epithelium
BIOSAMPLE
ASSAY
613 results
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total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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