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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
544
total RNA-seq
123
ChIP-seq
84
RNA microarray
21
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
1
pCHi-C
Assay category
550
Transcription
123
DNA binding
21
DNA accessibility
Target of assay
89
histone
89
histone modification
56
broad histone mark
33
narrow histone mark
25
control
9
transcription factor
4
RNA binding protein
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
684
bam
642
bigWig
552
tsv
115
bed narrowPeak
93
bigBed narrowPeak
89
txt
8
tagAlign
6
csv
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
782
Homo sapiens
Biosample type
660
tissue
96
cell line
primary cell
26
in vitro differentiated cells
Organ
452
connective tissue
386
adipose tissue
150
bone element
116
blood vessel
116
vasculature
87
heart
71
artery
28
brain
28
pancreas
26
epithelium
13
limb
8
kidney
8
skeleton
7
musculature of body
3
liver
Project
782
AMP
Genome assembly (visualization)
664
hg19
658
GRCh38
Lab
782
AMP-T2D consortium
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
biosample_type!
primary cell
BIOSAMPLE
ASSAY
782 results
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total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
ascending aorta
16
thoracic aorta
16
+ See 24 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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