Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
544
total RNA-seq
84
RNA microarray
78
ChIP-seq
21
ATAC-seq
9
DNase-seq
7
WGBS
6
single cell RNA-seq
3
snDrop-seq
1
FAIRE-seq
1
pCHi-C
Assay category
550
Transcription
78
DNA binding
31
DNA accessibility
7
DNA methylation
Target of assay
69
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
656
bam
629
bigWig
552
tsv
95
bed narrowPeak
89
txt
87
fastq
73
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
8
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
6
csv
4
bed bedgraph
1
bed bed3
Organism
754
Homo sapiens
Biosample type
571
tissue
157
cell line
primary cell
26
in vitro differentiated cells
Organ
453
connective tissue
387
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
56
liver
33
pancreas
26
epithelium
15
blood
15
bodily fluid
9
spleen
8
kidney
8
skeleton
6
limb
2
brain
Project
754
AMP
Genome assembly (visualization)
645
GRCh38
642
hg19
Lab
754
AMP-T2D consortium
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
biosample_type!
primary cell
BIOSAMPLE
ASSAY
754 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
snDrop-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
spleen
6
1
2
liver
4
2
1
+ See 19 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
HepG2
45
1
1
1
EndoC_BH1
26
GM12878
15
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
See all biosamples
Download