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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
23
total RNA-seq
12
single cell RNA-seq
6
WGBS
5
ATAC-seq
1
pCHi-C
Assay category
35
Transcription
32
DNA accessibility
6
DNA methylation
Date released
338
May, 2021
147
May, 2020
134
May, 2022
127
August, 2017
104
February, 2023
74
February, 2021
73
September, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
August, 2021
46
December, 2017
43
April, 2018
42
October, 2019
39
February, 2018
31
July, 2019
13
March, 2020
9
November, 2017
8
January, 2021
7
August, 2020
7
December, 2019
6
November, 2020
5
January, 2018
5
May, 2019
5
November, 2019
5
September, 2017
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
2
October, 2018
1
November, 2018
Available data
45
fastq
29
tsv
25
bam
24
bigWig
4
bed bedgraph
1
bed bed3
1
bed bed3+
1
bed narrowPeak
Organism
74
Homo sapiens
Biosample type
tissue
cell line
48
primary cell
26
in vitro differentiated cells
Organ
11
connective tissue
6
epithelium
6
pancreas
Project
45
HPAP
29
AMP
Genome assembly (visualization)
29
hg19
24
GRCh38
Lab
45
Klaus Kaestner, Upenn
29
AMP-T2D consortium
Audit category:
27
audit script error
18
inconsistent ontology term
biosample_type!
tissue
cell line
BIOSAMPLE
ASSAY
74 results
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Clear Filters
snATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
pCHi-C
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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