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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
27
snATAC-seq
14
ATAC-seq
12
single cell RNA-seq
8
ChIP-seq
6
WGBS
Assay category
113
Transcription
41
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
357
May, 2021
324
November, 2017
168
February, 2021
148
May, 2020
134
May, 2022
120
August, 2017
106
February, 2023
85
August, 2021
73
September, 2018
68
October, 2019
62
November, 2018
59
September, 2020
48
July, 2018
43
April, 2018
39
February, 2018
31
December, 2017
31
June, 2019
28
December, 2018
27
July, 2019
24
March, 2020
23
January, 2019
21
November, 2019
11
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
120
bam
107
bigWig
107
tsv
45
fastq
15
bed narrowPeak
8
tagAlign
4
bed bedgraph
2
bed bed3
bed bed3+
Organism
168
Homo sapiens
Biosample type
tissue
95
cell line
47
primary cell
26
in vitro differentiated cells
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
32
pancreas
10
connective tissue
1
liver
Project
123
AMP
45
HPAP
Genome assembly (visualization)
120
hg19
116
GRCh38
Lab
123
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
27
audit script error
1
inconsistent replicate
biosample_type!
tissue
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
168 results
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total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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