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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
14
ChIP-seq
6
WGBS
4
ATAC-seq
3
snDrop-seq
1
pCHi-C
Assay category
31
DNA accessibility
18
Transcription
14
DNA binding
6
DNA methylation
Target of assay
13
histone
13
histone modification
9
narrow histone mark
4
broad histone mark
1
transcription factor
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
bam
885
bigWig
559
tsv
369
fastq
336
bed narrowPeak
312
bigBed narrowPeak
89
txt
86
tagAlign
70
bed broadPeak
64
bigBed broadPeak
6
csv
4
bed bedgraph
3
tar
2
bed bed3
2
bed bed3+
Organism
157
Homo sapiens
Biosample type
106
tissue
45
primary cell
4
in vitro differentiated cells
2
cell line
Organ
84
bone element
13
brain
8
kidney
6
epithelium
6
pancreas
4
connective tissue
3
liver
Project
112
AMP
45
HPAP
Genome assembly (visualization)
6
hg19
Lab
112
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
157 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
ATAC-seq
snDrop-seq
pCHi-C
tissue
bone element
84
cingulate gyrus
6
kidney
5
layer of hippocampus
3
substantia nigra
2
+ See 6 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
in vitro differentiated cells
adipocyte
4
cell line
HepG2
1
1
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