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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
27
snATAC-seq
22
ATAC-seq
13
single cell RNA-seq
8
ChIP-seq
2
pCHi-C
Assay category
49
DNA accessibility
13
Transcription
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
195
August, 2021
189
February, 2023
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
72
February, 2021
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
572
bam
tsv
551
bigWig
45
fastq
23
bed narrowPeak
8
tagAlign
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
72
Homo sapiens
Biosample type
41
primary cell
18
cell line
9
tissue
4
in vitro differentiated cells
Organ
14
artery
14
blood vessel
14
heart
14
vasculature
8
bone element
8
skeleton
6
connective tissue
6
limb
3
liver
Project
39
HPAP
33
AMP
Genome assembly (visualization)
29
hg19
23
GRCh38
Lab
39
Klaus Kaestner, Upenn
33
AMP-T2D consortium
Audit category:
27
audit script error
1
inconsistent replicate
files.file_type!
tsv
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
72 results
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snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
primary cell
Langerhans cell
27
12
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
1
iPSC derived cell line
2
tissue
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
liver
1
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in vitro differentiated cells
adipocyte
4
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