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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
84
RNA microarray
58
ChIP-seq
27
snATAC-seq
13
single cell RNA-seq
2
pCHi-C
2
total RNA-seq
Assay category
149
DNA accessibility
58
DNA binding
15
Transcription
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
5
transcription factor
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
855
bam
811
bigWig
tsv
89
txt
58
tagAlign
50
bed narrowPeak
45
fastq
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
308
Homo sapiens
Biosample type
143
primary cell
143
tissue
18
cell line
4
in vitro differentiated cells
Organ
92
bone element
53
liver
14
artery
14
blood vessel
14
heart
14
vasculature
8
skeleton
6
connective tissue
6
limb
Project
269
AMP
39
HPAP
Genome assembly (visualization)
101
hg19
42
GRCh38
Lab
269
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
88
inconsistent ontology term
27
audit script error
1
inconsistent replicate
files.file_type!
tsv
BIOSAMPLE
ASSAY
308 results
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Clear Filters
ATAC-seq
RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
pCHi-C
total RNA-seq
primary cell
Langerhans cell
27
12
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
+ See 26 more…
tissue
bone element
84
liver
50
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 5 more…
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
See all biosamples
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