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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
497
total RNA-seq
27
snATAC-seq
18
ATAC-seq
13
single cell RNA-seq
8
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
510
Transcription
45
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
568
February, 2021
400
November, 2017
341
May, 2020
314
August, 2017
271
October, 2019
246
May, 2021
214
August, 2021
198
June, 2019
135
July, 2018
133
February, 2023
115
May, 2019
113
May, 2022
95
July, 2019
88
November, 2018
80
April, 2019
74
October, 2018
51
December, 2017
50
March, 2020
47
September, 2023
40
May, 2024
40
November, 2019
40
September, 2020
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
6
September, 2017
5
March, 2019
5
March, 2023
4
January, 2018
2
December, 2019
2
June, 2018
1
August, 2022
Available data
524
bam
505
tsv
503
bigWig
txt
39
fastq
23
bed narrowPeak
8
tagAlign
6
csv
2
bed bed3
2
bed bed3+
Organism
568
Homo sapiens
Biosample type
456
tissue
70
cell line
42
primary cell
in vitro differentiated cells
Organ
447
connective tissue
386
adipose tissue
66
artery
66
blood vessel
66
bone element
66
heart
66
vasculature
epithelium
32
pancreas
8
skeleton
6
limb
3
kidney
3
liver
Project
529
AMP
39
HPAP
Genome assembly (visualization)
522
hg19
520
GRCh38
Lab
529
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
27
audit script error
1
inconsistent replicate
files.file_type!
txt
biosample_type!
in vitro differentiated cells
organ_slims!
epithelium
BIOSAMPLE
ASSAY
568 results
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total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone tissue
58
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
distal epiphysis
1
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
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