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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
18
ATAC-seq
6
WGBS
5
ChIP-seq
5
single cell RNA-seq
3
snDrop-seq
Assay category
550
Transcription
18
DNA accessibility
6
DNA methylation
5
DNA binding
Target of assay
5
transcription factor
Date released
582
February, 2021
313
November, 2017
306
May, 2021
231
August, 2017
229
August, 2021
216
May, 2020
210
June, 2019
205
October, 2019
164
July, 2018
97
May, 2019
81
February, 2023
73
November, 2018
72
December, 2017
72
July, 2019
72
September, 2018
65
April, 2019
57
November, 2019
49
April, 2018
48
March, 2020
47
October, 2018
40
May, 2024
38
May, 2022
31
February, 2018
30
December, 2018
26
January, 2019
25
February, 2020
12
October, 2017
9
December, 2019
6
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
Available data
572
bam
559
tsv
551
bigWig
89
txt
45
fastq
23
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
582
Homo sapiens
Biosample type
460
tissue
92
cell line
22
in vitro differentiated cells
8
primary cell
Organ
450
connective tissue
386
adipose tissue
66
bone element
64
artery
64
blood vessel
64
heart
64
vasculature
32
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
1
liver
Project
576
AMP
6
HPAP
Genome assembly (visualization)
568
GRCh38
568
hg19
Lab
576
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
5
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
582 results
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Clear Filters
total RNA-seq
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
snDrop-seq
tissue
adipose tissue
381
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
52
8
4
EndoC_BH1
26
HepG2
1
iPSC derived cell line
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
primary cell
pancreatic alpha cell
6
osteoblast
1
1
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