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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
733
total RNA-seq
32
ChIP-seq
18
ATAC-seq
6
WGBS
5
single cell RNA-seq
3
snDrop-seq
1
pCHi-C
Assay category
738
Transcription
32
DNA binding
18
DNA accessibility
6
DNA methylation
Target of assay
27
histone
27
histone modification
27
narrow histone mark
5
transcription factor
Date released
582
February, 2021
313
November, 2017
306
May, 2021
231
August, 2017
229
August, 2021
216
May, 2020
210
June, 2019
205
October, 2019
164
July, 2018
97
May, 2019
81
February, 2023
73
November, 2018
72
December, 2017
72
July, 2019
72
September, 2018
65
April, 2019
57
November, 2019
49
April, 2018
48
March, 2020
47
October, 2018
40
May, 2024
38
May, 2022
31
February, 2018
30
December, 2018
26
January, 2019
25
February, 2020
12
October, 2017
9
December, 2019
6
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
Available data
855
bam
811
bigWig
748
tsv
89
txt
58
tagAlign
50
bed narrowPeak
45
fastq
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
798
Homo sapiens
Biosample type
630
tissue
93
cell line
53
primary cell
22
in vitro differentiated cells
Organ
450
connective tissue
386
adipose tissue
172
liver
66
bone element
64
artery
64
blood vessel
64
heart
64
vasculature
32
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
Project
747
AMP
45
T1D
6
HPAP
Genome assembly (visualization)
783
hg19
775
GRCh38
Lab
747
AMP-T2D consortium
45
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
48
inconsistent ontology term
5
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
798 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
liver
143
27
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
4
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
1
primary cell
pancreatic alpha cell
6
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 22 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
See all biosamples
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