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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
84
RNA microarray
17
ATAC-seq
8
ChIP-seq
6
single cell RNA-seq
3
snDrop-seq
1
pCHi-C
Assay category
102
Transcription
17
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
310
October, 2019
296
May, 2020
286
August, 2017
215
February, 2021
200
June, 2019
166
July, 2018
163
May, 2021
150
August, 2021
120
May, 2019
94
December, 2017
90
July, 2019
89
February, 2023
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
53
October, 2018
47
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
21
October, 2017
11
September, 2017
10
December, 2019
7
January, 2018
3
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
October, 2022
Available data
121
bam
104
tsv
101
bigWig
89
txt
22
bed narrowPeak
8
tagAlign
6
csv
1
bed bed3
1
bed bed3+
Organism
215
Homo sapiens
Biosample type
101
tissue
96
cell line
18
in vitro differentiated cells
Organ
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
26
epithelium
26
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
215
AMP
Genome assembly (visualization)
119
hg19
118
GRCh38
Lab
215
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
215 results
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total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
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