Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
523
total RNA-seq
128
ChIP-seq
84
RNA microarray
27
snATAC-seq
18
ATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
541
Transcription
128
DNA binding
45
DNA accessibility
6
DNA methylation
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
26
control
10
transcription factor
5
RNA binding protein
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
670
bam
626
bigWig
537
tsv
120
bed narrowPeak
97
bigBed narrowPeak
89
txt
45
fastq
8
tagAlign
6
csv
2
bed bed3
2
bed bed3+
Organism
809
Homo sapiens
Biosample type
660
tissue
96
cell line
53
primary cell
in vitro differentiated cells
Organ
447
connective tissue
386
adipose tissue
150
bone element
116
blood vessel
116
vasculature
87
heart
71
artery
37
epithelium
34
pancreas
28
brain
13
kidney
13
limb
8
skeleton
7
musculature of body
3
liver
Project
764
AMP
45
HPAP
Genome assembly (visualization)
645
hg19
642
GRCh38
Lab
764
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
113
inconsistent ontology term
32
audit script error
1
inconsistent replicate
month_released!
October, 2017
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
809 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
ascending aorta
16
thoracic aorta
16
+ See 24 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
kidney epithelial cell
5
osteoblast
1
1
1
See all biosamples
Download