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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
37
snATAC-seq
30
ATAC-seq
23
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
Transcription
67
DNA accessibility
23
DNA binding
6
DNA methylation
Target of assay
12
histone
12
histone modification
10
broad histone mark
6
control
5
transcription factor
2
narrow histone mark
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
84
txt
50
fastq
42
bam
35
bed narrowPeak
22
tagAlign
20
bigWig
9
tsv
6
bigBed narrowPeak
4
bed bedgraph
4
bed broadPeak
2
bed bed3
2
bed bed3+
Organism
184
Homo sapiens
Biosample type
128
tissue
35
primary cell
18
cell line
4
in vitro differentiated cells
Organ
92
bone element
16
brain
14
artery
14
blood vessel
14
heart
14
vasculature
11
pancreas
10
lung
8
skeleton
7
connective tissue
6
epithelium
6
limb
3
kidney
2
liver
1
adipose tissue
1
spleen
Project
142
AMP
33
HPAP
10
LungMap
Genome assembly (visualization)
42
hg19
37
GRCh38
Lab
141
AMP-T2D consortium
33
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
1
Stephen Parker, UMich
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
Audit category:
4
missing controlled_by
assay_slims!
Transcription
BIOSAMPLE
ASSAY
185 results
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Clear Filters
RNA microarray
snATAC-seq
ATAC-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
brain
15
lung
10
body of pancreas
4
cerebellum (Hemisphere)
1
+ See 14 more…
primary cell
Langerhans cell
27
pancreatic alpha cell
6
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
See all biosamples
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